Insertion junction: CLIP2.030789_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.030789
Chromosome:chromosome 12
Location:6487805
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g537671 (1 of 1) PTHR10799//PTHR10799:SF677 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCAACCCACAGGTGCCGCTGCAGCGGCTGGGCGAGGTGGCGCAGGCGC
Internal bar code:TCAATGATCACCGTCTTCAATG

Confirmation - LEAP-Seq

LEAP-Seq distance:623
LEAP-Seq percent confirming:42.8571
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CACCAGCTGCTCCAGGTAG
Suggested primer 2:GACCCCAACATGAAGACGGT