Insertion junction: CLIP2.030793_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.030793
Chromosome:chromosome 3
Location:6525045
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g194100 MAPKKK3 (1 of 1) PF14381 - Ethylene-responsive protein kinase Le-CTR1 (EDR1); Mitogen-Activated Protein Kinase Kinase Kinase outside_mRNA
Cre03.g800364 (1 of 3) PTHR23257:SF518 - DUAL SPECIFICITY PROTEIN KINASE SHKD CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GATCTGACTGAACGAGGGCCGGTCCGCGGGCTTGTCCGCCCAGCATGCCG
Internal bar code:ATGCGCGGCCGCGCGTATTAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:3076
LEAP-Seq percent confirming:95.0
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:GGTACGAGAGAGAACGAGCG
Suggested primer 2:CAGTCAATCCACGCACCTCT