Insertion junction: CLIP2.030974_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.030974
Chromosome:chromosome 5
Location:2416960
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g238600 PHC36 (1 of 24) IPR003882//IPR024616 - Pistil-specific extensin-like protein // Pherophorin; Pherophorin-chlamydomonas homolog 36 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGTAGATGTACTTTGCACATCGTGCTTGCTGTAGGGTCCGTTGCTGCAT
Internal bar code:CTCGGCCTTGTATGAAACAACA

Confirmation - LEAP-Seq

LEAP-Seq distance:390
LEAP-Seq percent confirming:92.5
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:GAGACGGAGGAGGAGGAGAG
Suggested primer 2:CTTAAGCCGTCGCATTTCCG