Insertion junction: CLIP2.030984_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.030984
Chromosome:chromosome 6
Location:5551371
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g287000 (1 of 1) PTHR31495//PTHR31495:SF0 - FAMILY NOT NAMED // PEROXYGENASE 1-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTAACAGCTGCTGACGCAGCTCACAAGCCAGCGAACACGCACTAGCAT
Internal bar code:CTCCCGGCACGGCACATGCAGT

Confirmation - LEAP-Seq

LEAP-Seq distance:448
LEAP-Seq percent confirming:74.5098
LEAP-Seq n confirming:38
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:51

Suggested primers for confirmation by PCR

Suggested primer 1:TGTATGCGTATGGGTGTCCG
Suggested primer 2:TGCAATTTTGTCCACGCCTG