Insertion junction: CLIP2.031008_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.031008
Chromosome:chromosome 1
Location:5998857
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g800109 (1 of 1) PTHR19331//PTHR19331:SF299 - LYSYL OXIDASE-RELATED // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTGTGGCACAGGAGTCAGGTGCGGCGTGTGCTGCTGGGGTCTACGTAC
Internal bar code:AGCCACGAGCTCTAGAGAAATC

Confirmation - LEAP-Seq

LEAP-Seq distance:1288
LEAP-Seq percent confirming:30.7692
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GCTCAGTGCGGCATACATTG
Suggested primer 2:TCTTGGTCGAGGTGTCGTTG