Insertion junction: CLIP2.031013_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.031013
Chromosome:chromosome 7
Location:4877368
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g346350 (1 of 2) PTHR10174//PTHR10174:SF113 - RETINALDEHYDE BINDING PROTEIN-RELATED // RETINALDEHYDE-BINDING PROTEIN 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTTCGTTCGTATGTGAAACGGCCGTGCATGCATGTGTGTGTGTGTGTGT
Internal bar code:GTGTTCGTAGATTTTTCCTCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2282
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:40
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:45

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCCTTTCAAGCCTCCAGC
Suggested primer 2:CAGGAATGGGAGCGAGGTTT