Insertion junction: CLIP2.031046_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.031046
Chromosome:chromosome 10
Location:6479633
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g465050 (1 of 1) PTHR19303//PTHR19303:SF285 - TRANSPOSON // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCGGCAACGAGCTGCGCACCGTGCGGCCCAAGGACATCATGCACATCC
Internal bar code:GCGACGGTGACTAGTTGTTCCG

Confirmation - LEAP-Seq

LEAP-Seq distance:4011
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:40
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:40

Suggested primers for confirmation by PCR

Suggested primer 1:AGCTGCTGCAGTAATGTCGT
Suggested primer 2:GACATGTGCTGGAACCTGGA