Insertion junction: CLIP2.031083_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.031083
Chromosome:chromosome 14
Location:1809846
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g619613 (1 of 1) PF04855 - SNF5 / SMARCB1 / INI1 (SNF5) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGAACCGGCTCTTGGTGCAGCAGCCACCCGGCTCGGAGGGGGTGTCCG
Internal bar code:TCTTTCTTCAGTTTGTATTCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:311
LEAP-Seq percent confirming:93.75
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCTCCCCCACCTAATGTA
Suggested primer 2:CTGCAGGTGGAGGAGGAAAG