Insertion junction: CLIP2.031107_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.031107
Chromosome:chromosome 6
Location:8518966
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g309300 KSGA,RRM7,KSGA1 Dimethyl transferase for modification of 16S rRNA; (1 of 1) 2.1.1.182 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTAGGATAGAAAGCTAGGGAGCCCCGCGGAACTGCACAGGTGGAAAGG
Internal bar code:CAATATGGATAAATGACGAAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:193
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:GCCTGTCTAGTTGCCTGGTT
Suggested primer 2:GTCGGATGTGTGATGCATGC