Insertion junction: CLIP2.031138_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.031138
Chromosome:chromosome 8
Location:1226214
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g363300 (1 of 1) 2.4.2.1//2.4.2.28 - Purine-nucleoside phosphorylase / PNPase // S-methyl-5'-thioadenosine phosphorylase / MTAPase intron
Cre08.g363350 (1 of 2) IPR003034//IPR009061 - SAP domain // Putative DNA-binding domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCTAGTCGTGCGTGAGTGTGAGCCCCCACCGGACATGCGCCATTTCCA
Internal bar code:ATTATTGGCGACTGTTTCAGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:2700
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:CTGAACTCCAGAAGCCAGGG
Suggested primer 2:GTGCGGTCTGGTGTGGATAA