Insertion junction: CLIP2.031201_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.031201
Chromosome:chromosome 8
Location:3076384
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g375550 (1 of 25) IPR013216//IPR029063 - Methyltransferase type 11 // S-adenosyl-L-methionine-dependent methyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTCCTGCTCGCTCTACTATTTTACTCCCTTTCAAAACGCAGGCGCGCA
Internal bar code:ATTTTTATGTCCGTTAGCTATC

Confirmation - LEAP-Seq

LEAP-Seq distance:688
LEAP-Seq percent confirming:96.4286
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CCTGACCACCGTACTTGCTT
Suggested primer 2:GCAAGGAGCAAAGCAAAGCT