Insertion junction: CLIP2.031220_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.031220
Chromosome:chromosome 12
Location:2513002
Confidence (%):40
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00076030

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATATCACGACAACGCACGGTCACACGCCAGGTCATGCTGGCACACGCTT
Internal bar code:AGGCAGCCGTTCGGTGGACCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1034
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:CGGTCGCATTTTCTTTGGCA
Suggested primer 2:CCGGGTCGTTCTTGTAACCA