Insertion junction: CLIP2.031336_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.031336
Chromosome:chromosome 3
Location:7306250
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g206950 (1 of 1) PF05183 - RNA dependent RNA polymerase (RdRP) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCAGTGGGCGTACCGGGTGAGAGCGCGTTGAGAGGAGGGCGGGGGGAGGT
Internal bar code:GGGGCTGCTAGTCTGCGAACAC

Confirmation - LEAP-Seq

LEAP-Seq distance:521
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:CTGTGTGGTGATGACGTGGA
Suggested primer 2:CTGCTTTGTTCATCGCCTCG