Insertion junction: CLIP2.031577_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.031577
Chromosome:chromosome 4
Location:2246896
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g220350 ATPVA3 Vacuolar ATP synthase subunit A; (1 of 3) K02154 - V-type H+-transporting ATPase subunit a (ATPeV0A, ATP6N) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTCTGCAGTCTTCAGTGCATCCTGTACCGCTTTTCCAAACATCCCTGCA
Internal bar code:GTAAGATCCACGGACTGTCTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:228
LEAP-Seq percent confirming:25.9259
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:20
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:ACCCTCCCACAGATGATCCA
Suggested primer 2:TGAACCCTTTTGCCCCCTTT