Insertion junction: CLIP2.031637_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.031637
Chromosome:chromosome 9
Location:2447869
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g393400 VTE4 Tocopherol O-methyltransferase/gamma-tocopherol methyltransferase; (1 of 1) 2.1.1.95 - Tocopherol O-methyltransferase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTGAGGCAGACGTTGGGCGGGGCCGGGGCCCGGGGGCCATAGCGTGGCT
Internal bar code:GTTGGGGACGCTAAGGTATGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1135
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:CAGGCCATTGCATCGACATG
Suggested primer 2:AAGGTGGCACTTGTACGAGG