Insertion junction: CLIP2.031659_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.031659
Chromosome:chromosome 17
Location:2561988
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g716050 (1 of 1) PTHR20953:SF2 - PROTEIN SEEDLING PLASTID DEVELOPMENT 1 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TATCGCCGCGGACGAGGCTGCCCGGCGGGTGGTGGTGGTGGACACCAGCA
Internal bar code:GCTAATGTATCACTAGCCTGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:3061
LEAP-Seq percent confirming:77.1429
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:CGCGCTAACATGTTCCTTCG
Suggested primer 2:AGGTGGGCACATGGTAATGG