Insertion junction: CLIP2.031688_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.031688
Chromosome:chromosome 11
Location:3819538
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g479383 (1 of 1) IPR000104//IPR013122 - Antifreeze protein, type I // Polycystin cation channel, PKD1/PKD2 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACCCCACCATAGCGCAGAAAATCCCGGTGCATTAAGCCAGTAAGGCGCA
Internal bar code:TCGGATGCACAGTTCTTATCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:6012
LEAP-Seq percent confirming:25.9259
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:40
LEAP-Seq n unique pos:54

Suggested primers for confirmation by PCR

Suggested primer 1:ACTAACCACTTTCGCGCTCA
Suggested primer 2:TGAGTTCTGCAAAAGCGTGC