Insertion junction: CLIP2.031840_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.031840
Chromosome:chromosome 17
Location:5572714
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g739650 MAE1,MFT1 MATE efflux family protein; (1 of 5) PTHR11206//PTHR11206:SF94 - MULTIDRUG RESISTANCE PROTEIN // DNA-DAMAGE-INDUCIBLE PROTEIN F intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCTGGCCCACGCACCGCGGCCAGCTGCGTGGAACCGGCGTGCCCCATGT
Internal bar code:CCTATTATGCCTTTGTAGCCCG

Confirmation - LEAP-Seq

LEAP-Seq distance:3258
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:GGTGAGACCTCAAGACTGGC
Suggested primer 2:ACATGGCTGTTGCTACTGCT