Insertion junction: CLIP2.031941_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.031941
Chromosome:chromosome 10
Location:1253477
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g426600 CYP739A6,CYP27 Cytochrome P450, CYP213 superfamily; (1 of 8) PTHR24286//PTHR24286:SF77 - FAMILY NOT NAMED // ABSCISIC ACID 8'-HYDROXYLASE 4 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCGGTGACAGGAGGGTCGTGGAGGTAAGGAGGGCAAAGCGGCGACCGAG
Internal bar code:GCGACGGTATACAAACATGATG

Confirmation - LEAP-Seq

LEAP-Seq distance:2538
LEAP-Seq percent confirming:96.3636
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:CATGCTCCCAGCCTTTACCA
Suggested primer 2:AGGTGTGTGTGTGTGTGTGT