Insertion junction: CLIP2.031996_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.031996
Chromosome:chromosome 11
Location:3994180
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g801331 (1 of 80) IPR003882 - Pistil-specific extensin-like protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCGACCGGCTCTCCGGCTACGCCGTCCGCAGTGCGGTGCAGCCACCCAA
Internal bar code:CCTAGGATGTTTGGGAGAACGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1255
LEAP-Seq percent confirming:82.6923
LEAP-Seq n confirming:43
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:52

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCCAGCATTTGCATGTTG
Suggested primer 2:TGCGTCGTATGCGTGTACAT