Insertion junction: CLIP2.032007_5

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.032007
Chromosome:chromosome 12
Location:9694407
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00235904
lncRNA_TCONS_00236465

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAGAATGTGAGTGTGACAATGCCCAAGTGCTAGGCGGATCATCACATG
Internal bar code:GTTATAATCGTACTGCTTCAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1926
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:GAACGATGCAAGCTACTGCG
Suggested primer 2:CGCGCCACCAAAACAAAAAC