Insertion junction: CLIP2.032024_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.032024
Chromosome:chromosome 10
Location:1557726
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g428900 RRM9,CGL72 (1 of 1) 2.1.1.226 - 23S rRNA (cytidine(1920)-2'-O)-methyltransferase; Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCAAGCTAACACGCGTTTGCCACTCTCCAAACCTCTTGTGCCACACCT
Internal bar code:CGGTTCTCAACTTGCGTGGTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:886
LEAP-Seq percent confirming:47.0588
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CTTAGGGCTAGAGAACCGCG
Suggested primer 2:CATCTCAGTGCTGCTGGTGA