Insertion junction: CLIP2.032063_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.032063
Chromosome:chromosome 4
Location:3274613
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g226750 (1 of 10) PTHR31867:SF1 - EXPANSIN-A1-RELATED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCGCCCAATGGCGGCTGCAAGGACGTGCGCCTGCGCGACCTCACCCCCA
Internal bar code:GTCGATGCTCCCGATTGCATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2878
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:TCAGCACTGCCACAGGTAAG
Suggested primer 2:TCCTCTTCCTCCAGCTCCTC