Insertion junction: CLIP2.032108_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.032108
Chromosome:chromosome 9
Location:737609
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g404250 SRR29, CEP9,CEP9 Cysteine endopeptidase; (1 of 1) PF00112//PF01476//PF07645 - Papain family cysteine protease (Peptidase_C1) // LysM domain (LysM) // Calcium-binding EGF domain (EGF_CA) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCAGCAGCATCACTTGCATCAACGGCGGCGGCAGCAGGAGGAGGCGTTG
Internal bar code:TCGCGGATAATTGCTACGGGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1073
LEAP-Seq percent confirming:88.2353
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:GCCCATTGGTGATGCGAATC
Suggested primer 2:GCAACTCGTCACTCCAGTCA