Insertion junction: CLIP2.032109_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.032109
Chromosome:chromosome 3
Location:2728984
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g800310 (1 of 24) IPR003882//IPR024616 - Pistil-specific extensin-like protein // Pherophorin intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGGTAGCCCCATGCGTATATGCGAGACATGTGCTGCCATCTGCAACGTG
Internal bar code:TTCAAGGCAAGCTCATGTGCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1813
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:ACACAAGCGAGAAAGGCGTA
Suggested primer 2:ATACGTGGACGGTCGATTCG