Insertion junction: CLIP2.032264_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.032264
Chromosome:chromosome 8
Location:1618969
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g365720 (1 of 781) IPR000104 - Antifreeze protein, type I intron
lncRNA_TCONS_00154085 intron
lncRNA_TCONS_00155246 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTTGCCCCCCCCTCCCTCTCCCCCCTTGCCGGCTACCTTAGTGGCTGCG
Internal bar code:AAAGCGTCCCTTGTACTCTCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:654
LEAP-Seq percent confirming:14.2857
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CACACACAGGACACGCTTTG
Suggested primer 2:TCACATTTTTGCCCGCACAG