Insertion junction: CLIP2.032308_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.032308
Chromosome:chromosome 1
Location:6715489
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g048000 TPM1 Tropomyosin 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATACCGTATTCCCTGTGGACAGCGTCACAGCGCTCGCGCAGCCCTGGGCA
Internal bar code:TATGCCTAATGTTCTTGCAGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1726
LEAP-Seq percent confirming:35.8491
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:34
LEAP-Seq n unique pos:53

Suggested primers for confirmation by PCR

Suggested primer 1:CAGCATATTCACCGTGTGCG
Suggested primer 2:GTCAGCCAGAAGCCCTGAAT