Insertion junction: CLIP2.032382_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.032382
Chromosome:chromosome 11
Location:4114335
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00166145

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGGGGCAAACAGGGGCAAAGGATCCAGAACCCGACAAGTGTCCCCGAAT
Internal bar code:CACATGAGTCCTCGCTTAGGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1053
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:8

Suggested primers for confirmation by PCR

Suggested primer 1:TAGTCAGAGGCTGTTCCGGA
Suggested primer 2:CGAAATGCGTGATTGCGGAT