Insertion junction: CLIP2.032410_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.032410
Chromosome:chromosome 8
Location:2548733
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g372900 VFL1 (1 of 21) IPR001611//IPR003591 - Leucine-rich repeat // Leucine-rich repeat, typical subtype; Variable flagella protein 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCCACGAGAATTGGTAAATGCAAAACGTGCATACAATGCACGTTTGGTG
Internal bar code:CGGTGTTCAAAGTTTCGGTGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:226
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:CCATTTCGCCTTGTTGCACA
Suggested primer 2:GGGGTCACAGTCTTGATGGG