Insertion junction: CLIP2.032424_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.032424
Chromosome:chromosome 7
Location:161256
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g313206 (1 of 2) 2.7.7.48 - RNA-directed RNA polymerase / RNA nucleotidyltransferase (RNA-directed) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGTGCTCAGCAGCTGGGGCCTGCCGCTCACACCGCAGCTACTGCCGCCT
Internal bar code:AATAATGGTGTGGGAACGGGCC

Confirmation - LEAP-Seq

LEAP-Seq distance:362
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:ACTGCGAGTTGAGTGAGGTG
Suggested primer 2:CAGAGCTCACGTCCCCTTG