Insertion junction: CLIP2.032463_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.032463
Chromosome:chromosome 14
Location:446812
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g610750 MAE16 (1 of 11) K03327 - multidrug resistance protein, MATE family (TC.MATE, SLC47A, norM, mdtK, dinF); MATE efflux family protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACAACAGGTTGAAGTACTGGGACGTGGAGGGCGAGGGGAGAGGGGAGTG
Internal bar code:TTTGTCCGGCCTTACCTGTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:339
LEAP-Seq percent confirming:81.8182
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:ATCGCTCCTATACCCCTCCC
Suggested primer 2:TACAATGCCCCTCCCCCTAA