Insertion junction: CLIP2.032463_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.032463
Chromosome:chromosome 14
Location:446814
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre14.g610750 MAE16 (1 of 11) K03327 - multidrug resistance protein, MATE family (TC.MATE, SLC47A, norM, mdtK, dinF); MATE efflux family protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTTCCTGTTGGGCTGCTCCACAGCCCTGGACACCCTGGGCAGCCAGGCC
Internal bar code:TTTGTCCGGCCTTACCTGTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:194
LEAP-Seq percent confirming:46.1538
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:TACAATGCCCCTCCCCCTAA
Suggested primer 2:ATCGCTCCTATACCCCTCCC