Insertion junction: CLIP2.032496_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.032496
Chromosome:chromosome 16
Location:4844840
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g687301 SRH26 (1 of 1) K15192 - TATA-binding protein-associated factor [EC:3.6.4.-] (BTAF1, MOT1); SNF2-related DNA/RNA helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAGTCAACCCGCACCCGCCTCCCACACCCCGCAGGCCATGGACCGCGCCC
Internal bar code:GGAACCACGATAACTGCTTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:141
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:GCAAGCTGTCCTCGCAAAAA
Suggested primer 2:AATCGCACACACAATCGCAC