Insertion junction: CLIP2.032504_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.032504
Chromosome:chromosome 9
Location:2696227
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g391753 CDS
Cre09.g801023 gene_edge/mRNA_edge/3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGGAGCCAAACAGTTGCACAGGCGCAGCGGGTGTGGCAGGTGACCGGCGC
Internal bar code:GTATTACGTCTGTTCGGATTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:2274
LEAP-Seq percent confirming:98.3607
LEAP-Seq n confirming:60
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:61

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCTGGTCAGCCCTTTCAG
Suggested primer 2:CCCCTTCTCCCTAGAGCTGT