Insertion junction: CLIP2.032596_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.032596
Chromosome:chromosome 1
Location:4139986
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g027550 (1 of 3) PTHR24291//PTHR24291:SF54 - FAMILY NOT NAMED // PROTEIN LUTEIN DEFICIENT 5, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTCCGCCACCTCCTCCTCCGCCCCCGCCTCCTCCAGCTCGCCCCTGCTC
Internal bar code:CTATAGTTTGATTTAGTTACGT

Confirmation - LEAP-Seq

LEAP-Seq distance:524
LEAP-Seq percent confirming:57.1429
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:CTTGAGAGCGTGTGGACACT
Suggested primer 2:GTCAGGGTGCTGGTCTTACC