Insertion junction: CLIP2.032875_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.032875
Chromosome:chromosome 1
Location:3340285
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g021600 HEL1 (1 of 1) PTHR24031//PTHR24031:SF255//PTHR24031:SF274 - RNA HELICASE // DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 // SUBFAMILY NOT NAMED; DEAD-box RNA helicase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGCTAGGGGCGGCGTTGTCAGTTGTCAGCCAGCAGATTGGCCGGATGGT
Internal bar code:CGCGATGCGTGACAGGCGTTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1164
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GAGCGGAGTCAGATACGGTG
Suggested primer 2:CATCCTGGATGAGGTACGCC