Insertion junction: CLIP2.032964_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.032964
Chromosome:chromosome 16
Location:6768378
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g672450 (1 of 781) IPR000104 - Antifreeze protein, type I CDS
lncRNA_TCONS_00150411 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCAAAGTGGTGCAGTCCGCGTCGATGGAGAACGGAACTGCGAGGGCACG
Internal bar code:TGTCTACTTAAATAGTCGCCCT

Confirmation - LEAP-Seq

LEAP-Seq distance:1012
LEAP-Seq percent confirming:73.5294
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:ACCCATACGCAAACCTCCAG
Suggested primer 2:AAGCTTACCTTCTGCTGCGT