Insertion junction: CLIP2.033011_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.033011
Chromosome:chromosome 12
Location:5867384
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g533400 (1 of 1) PTHR13527:SF0 - SAYSVFN DOMAIN-CONTAINING PROTEIN 1 intron
lncRNA_TCONS_00110219 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCGGGGAGGCCTGGGGGCTGCGAGACCGCGTCAGGAGTTTGGGGCGGGT
Internal bar code:GGGGCTGAGTATTGGTTTGTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1175
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:CATCATTCAGGAGCGCTTGC
Suggested primer 2:CCTCTCGTGCTCGGCATTAT