Insertion junction: CLIP2.033042_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.033042
Chromosome:chromosome 4
Location:3743383
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g229374 (1 of 352) PF00078 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTATGAGCGCGCGGCACAGGGCCTCCCGCCGCGCGCTGTGGTGCGGCGGG
Internal bar code:CGTATGGGGGTCAACTGAATGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2310
LEAP-Seq percent confirming:4.34783
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCCTTTCAAGCCTCCAGC
Suggested primer 2:ATTACCGCCATAGGACGCTG