Insertion junction: CLIP2.033045_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.033045
Chromosome:chromosome 13
Location:2439817
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g579598 SSS3B,SSS3 (1 of 2) PTHR12526//PTHR12526:SF341 - GLYCOSYLTRANSFERASE // SUBFAMILY NOT NAMED; Soluble starch synthase III intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGTGCAACCTGCCGCGTCCGCGCTGTCGCCCCAGGGAATCCGCGATATC
Internal bar code:ACAGTTGTTTTTTCAGACTCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:679
LEAP-Seq percent confirming:91.3043
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CGGATAAGCTGTGGAGGCAA
Suggested primer 2:CCTCTCCCACCTTCTCCGTA