Insertion junction: CLIP2.033178_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.033178
Chromosome:chromosome 3
Location:5150005
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g800343 (1 of 20) IPR010095//IPR013083 - Transposase IS605, OrfB, C-terminal // Zinc finger, RING/FYVE/PHD-type intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGACCTGGCGGCGGCGCAGGCCTTGGGCCCAGCAGTGTCGGCGACCTCGG
Internal bar code:TATTCGGCAATTCGCCACGCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1587
LEAP-Seq percent confirming:88.5714
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:TCAAACAATGCTGCTGCCAC
Suggested primer 2:CGAAACCTGCGTGGCATATG