Insertion junction: CLIP2.033222_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.033222
Chromosome:chromosome 12
Location:8796199
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g546950 3'UTR
Cre12.g547001 (1 of 70) PF07282 - Putative transposase DNA-binding domain (OrfB_Zn_ribbon) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGCCGGTGTCTGATTTGCGGTCTTTGCTGGCGAGCATAGCGTGGCAGT
Internal bar code:AATCGAGCTACGGGCTACTCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:416
LEAP-Seq percent confirming:90.4762
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTCATATGGAATCGGCCC
Suggested primer 2:AGGATGAAGGCCACGACAAG