Insertion junction: CLIP2.033225_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.033225
Chromosome:chromosome 3
Location:8859793
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g205809 (1 of 1) PF01367//PF02739 - 5'-3' exonuclease, C-terminal SAM fold (5_3_exonuc) // 5'-3' exonuclease, N-terminal resolvase-like domain (5_3_exonuc_N) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTCCTCATCCTTGGGCGTACGCCCCGCCTTGTATGCCTGAGGCGGCAGC
Internal bar code:TGTGTTTGCTCTGGCCCGTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:469
LEAP-Seq percent confirming:62.5
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:AAGTTGTGTTGCCACCAGGA
Suggested primer 2:GCTCGTCAAAGGGGAAGTCA