Insertion junction: CLIP2.033244_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.033244
Chromosome:chromosome 3
Location:5334967
Confidence (%):80
Locus systematic id Locus common name Defline Feature
lncRNA_TCONS_00234526

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCAGGCCCTTTGTTCAGGCCTGCGGTGTGTTGAGCGCTGGCCCTCTTTTA
Internal bar code:TTTTTCAGTATTTGATGACGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:4004
LEAP-Seq percent confirming:98.9583
LEAP-Seq n confirming:95
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:96

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGTGCTCAAGTGTGCAG
Suggested primer 2:GCTCCAATGCGCAGGTTATG