Insertion junction: CLIP2.033293_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.033293
Chromosome:chromosome 11
Location:4437296
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g483351 PHC44 Putative pherophorin-chlamydomonas homolog; (1 of 1) IPR003072//IPR003882//IPR024616 - Orphan nuclear receptor, NOR1 type // Pistil-specific extensin-like protein // Pherophorin CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGGCCGTTAACAGTGTAGTCAACGAAGCGGCCCGTGCACTGCTTGCCTA
Internal bar code:GTGTCTGGTCACCCGACCCGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:3523
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:72
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:72

Suggested primers for confirmation by PCR

Suggested primer 1:TCAAGGTGGGTTTGCAGTGT
Suggested primer 2:GTTTCCATCCCTTGGGTCGT