Insertion junction: CLIP2.033414_4

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.033414
Chromosome:chromosome 6
Location:3462945
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278107 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGTAGTTAATCCATCCACCGCTCGCGACTACTCGCCAGCTTTCCGCTCG
Internal bar code:GGAAAATTTATACAACGCGTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:397
LEAP-Seq percent confirming:27.2727
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:ACACGGGTCATGTGGAAGTC
Suggested primer 2:GTCCAAGCTACCCCAACCTC