Insertion junction: CLIP2.033457_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.033457
Chromosome:chromosome 6
Location:7314388
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g299450 intron
lncRNA_TCONS_00081167 intron
lncRNA_TCONS_00082272 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGGGGTCATGCGAGCTCGCTGGGGCGCCATGACGTGGCCAGCCAACCGC
Internal bar code:ACGGCTGGAAAGCAGTCCCAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:311
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:TCTTACCATCAGCAGCAGCC
Suggested primer 2:TGCCGTGCCCCTTTTTAGAT