Insertion junction: CLIP2.033606_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.033606
Chromosome:chromosome 6
Location:3550678
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g278124 (1 of 1) PTHR12894//PTHR12894:SF10 - CNH DOMAIN CONTAINING // VAM6/VPS39-LIKE PROTEIN CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGACAGATGGAGCACGCCCGCTCGCCCGTCACCAGCACGCGCTGCTGCCG
Internal bar code:GATATGATCGTGTTCCTCCAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1340
LEAP-Seq percent confirming:68.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:TTGGGGAAGGGGAGAGGTAG
Suggested primer 2:CGAACTCGCCAGCTAGCATA