Insertion junction: CLIP2.033617_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.033617
Chromosome:chromosome 2
Location:412756
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g075900 STK9,STPK9,SNRK2C (1 of 1) IPR000719//IPR001245//IPR002290//IPR004223//IPR011009//IPR020635 - Protein kinase domain // Serine-threonine/tyrosine-protein kinase catalytic domain // Serine/threonine/dual specificity protein kinase, catalytic domain // Vitamin B12-dependent methionine synthase, activation domain // Protein kinase-like domain // Tyrosine-protein kinase, catalytic domain; snRK1 family in Chlamydomonas, subgroup 2 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAAGTGCATCATAAGTAAAGTAGTGCCCAGTAAGCTAGATTGCCCACCAA
Internal bar code:TAAGTAGACAAGCCGATTCGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:187
LEAP-Seq percent confirming:1.42857
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:69
LEAP-Seq n unique pos:70

Suggested primers for confirmation by PCR

Suggested primer 1:CATGTTGCTGGTGTGTGGTG
Suggested primer 2:GATGTCTGTGTGTGGGAGGG