Insertion junction: CLIP2.033655_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.033655
Chromosome:chromosome 1
Location:1437648
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g007651 PUS10 (1 of 1) 5.4.99.27 - tRNA pseudouridine(13) synthase / tRNA Psi(13) synthase; RNA pseudouridine synthase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGGGCCGCCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG
Internal bar code:TGTGGAGGATTCATTCACTTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:608
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:TAAACGCAACCCCTCCCTTC
Suggested primer 2:GTGACTGCGTGTGTGTGAAC